{ "cells": [ { "cell_type": "markdown", "id": "f5257869", "metadata": {}, "source": [ "# Step 1 is to import Data. \n", "Seems like it is possible to import ur Excel directly:" ] }, { "cell_type": "markdown", "id": "003d5178", "metadata": {}, "source": [ "## Here are the import. Not that important" ] }, { "cell_type": "code", "execution_count": 47, "id": "7594a3a3", "metadata": {}, "outputs": [], "source": [ "import pandas as pd\n", "from dataclasses import dataclass\n", "from datetime import date, datetime" ] }, { "cell_type": "markdown", "id": "c276e1f8", "metadata": {}, "source": [ "## Here is the data" ] }, { "cell_type": "markdown", "id": "6ee960c6", "metadata": {}, "source": [ "### \"LSC raw data\" sheet has two tables" ] }, { "cell_type": "code", "execution_count": 42, "id": "87639af2-44c8-425f-bd0d-37348e1fbaa3", "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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PositionSample_IDCPMEfficiencyDPM im VialBq im VialError 2S%Lumi %TDCR
0A01blank68.34NaNNaNNaN7.6534.0390.278
1A02Tc stock 10e-4M65636.100.97567331.401122.1900.2520.0190.972
2A03Tc_sid_20min_4a7069.880.9757250.55120.8420.7510.0730.972
3A04Tc_sid_20min_5a7887.320.9778075.90134.5980.7110.0690.974
4A05Tc_sid_20min_6a-17.610.8020.000.0008.8826.6630.757
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" ], "text/plain": [ " Position Sample_ID CPM Efficiency DPM im Vial Bq im Vial \\\n", "0 A01 blank 68.34 NaN NaN NaN \n", "1 A02 Tc stock 10e-4M 65636.10 0.975 67331.40 1122.190 \n", "2 A03 Tc_sid_20min_4a 7069.88 0.975 7250.55 120.842 \n", "3 A04 Tc_sid_20min_5a 7887.32 0.977 8075.90 134.598 \n", "4 A05 Tc_sid_20min_6a -17.61 0.802 0.00 0.000 \n", "\n", " Error 2S% Lumi % TDCR \n", "0 7.653 4.039 0.278 \n", "1 0.252 0.019 0.972 \n", "2 0.751 0.073 0.972 \n", "3 0.711 0.069 0.974 \n", "4 8.882 6.663 0.757 " ] }, "execution_count": 42, "metadata": {}, "output_type": "execute_result" } ], "source": [ "LSC_raw_data_part1 = pd.read_excel(\"Tc pH assay siderite.xlsx\", sheet_name=\"LSC raw data\", nrows=14)\n", "LSC_raw_data_part1.head()" ] }, { "cell_type": "markdown", "id": "09585c9a", "metadata": {}, "source": [ "The second table starts at 18th row, so I had to skip some rows and also the column A for table 2 is empty, so I did the `usecols` range" ] }, { "cell_type": "code", "execution_count": 43, "id": "ba4cf093", "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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Unnamed: 1Unnamed: 2Unnamed: 3Unnamed: 4Unnamed: 5Unnamed: 6Unnamed: 7Unnamed: 8Unnamed: 9Unnamed: 10
0Sample_IDCPMEfficiencyDPM im VialLSC, mLTc aliquot, mLVial, Bq/mlSample, Bq/mlSample [99Tc], mMSample [99Tc], mM
1Tc stock 10e-4M65636.10.97567331.450.2215.8057695610.950.0895470.00009
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" ], "text/plain": [ " Unnamed: 1 Unnamed: 2 Unnamed: 3 Unnamed: 4 Unnamed: 5 \\\n", "0 Sample_ID CPM Efficiency DPM im Vial LSC, mL \n", "1 Tc stock 10e-4M 65636.1 0.975 67331.4 5 \n", "\n", " Unnamed: 6 Unnamed: 7 Unnamed: 8 Unnamed: 9 \\\n", "0 Tc aliquot, mL Vial, Bq/ml Sample, Bq/ml Sample [99Tc], mM \n", "1 0.2 215.805769 5610.95 0.089547 \n", "\n", " Unnamed: 10 \n", "0 Sample [99Tc], mM \n", "1 0.00009 " ] }, "execution_count": 43, "metadata": {}, "output_type": "execute_result" } ], "source": [ "LSC_raw_data_part2 = pd.read_excel(\"Tc pH assay siderite.xlsx\", sheet_name=\"LSC raw data\",skiprows=16, usecols=\"B:K\")\n", "LSC_raw_data_part2.head()" ] }, { "cell_type": "markdown", "id": "9f781886", "metadata": {}, "source": [ "### LSC data" ] }, { "cell_type": "code", "execution_count": 49, "id": "0849ddc0", "metadata": {}, "outputs": [], "source": [ "@dataclass\n", "class LSC_data:\n", " description: str\n", " measured_date: date\n", " data_blank: pd.DataFrame = None\n", " data_stock: pd.DataFrame = None\n", " data_20min: pd.DataFrame = None" ] }, { "cell_type": "code", "execution_count": 50, "id": "28c3d5a6", "metadata": {}, "outputs": [], "source": [ "LSC_data_TC_11_03_26 = LSC_data(\n", " description=\"1E-5 M Tc with 1.3 g/L of siderite, after 30 min\",\n", " measured_date=datetime.strptime(\"11.03.2026\", \"%d.%m.%Y\").date(),\n", ")" ] }, { "cell_type": "code", "execution_count": 51, "id": "d6ee04cb", "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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PositionsSample IDcpmLSC, mL
0A01blank68.345
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" ], "text/plain": [ " Positions Sample ID cpm LSC, mL\n", "0 A01 blank 68.34 5" ] }, "execution_count": 51, "metadata": {}, "output_type": "execute_result" } ], "source": [ "LSC_data_TC_11_03_26.data_blank = pd.read_excel(\"Tc pH assay siderite.xlsx\", sheet_name=\"LSC data\",nrows=1, skiprows=4, usecols=\"A:C, F\")\n", "LSC_data_TC_11_03_26.data_blank" ] }, { "cell_type": "code", "execution_count": 67, "id": "64965457", "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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PositionsSample IDcpmEfficiencyDPM in vialLSC, mLTc aliquot, mLVial, Bq/mlSample, Bq/mlSample [99Tc], MLSC waste, Bq/mLBq, solid waste
0A02Tc stock 10e-4M65636.10.97567331.450.2215.8057695610.950.00009215.80576928054.75
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" ], "text/plain": [ " Positions Sample ID cpm Efficiency DPM in vial LSC, mL \\\n", "0 A02 Tc stock 10e-4M 65636.1 0.975 67331.4 5 \n", "\n", " Tc aliquot, mL Vial, Bq/ml Sample, Bq/ml Sample [99Tc], M \\\n", "0 0.2 215.805769 5610.95 0.00009 \n", "\n", " LSC waste, Bq/mL Bq, solid waste \n", "0 215.805769 28054.75 " ] }, "execution_count": 67, "metadata": {}, "output_type": "execute_result" } ], "source": [ "LSC_data_TC_11_03_26.data_stock = pd.read_excel(\"Tc pH assay siderite.xlsx\", sheet_name=\"LSC data\", skiprows=[0,1,2,3,5], nrows=1)\n", "LSC_data_TC_11_03_26.data_stock" ] }, { "cell_type": "code", "execution_count": 71, "id": "6a867236", "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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PositionsSample IDcpmEfficiencyDPM in vialLSC, mLTc aliquot, mLVial, Bq/mlSample, Bq/mlSample [99Tc], MLSC waste, Bq/mLBq, solid waste
0A03Tc_sid_20min_4a7069.880.9757250.55050.223.238942604.2125009.642853e-0623.238942-215.587500
1A04Tc_sid_20min_5a7887.320.9778075.90050.225.884295672.9916671.074053e-0525.884295-559.483333
2A05Tc_sid_20min_6a-17.610.8020.00050.20.0000000.0000000.000000e+000.0000002805.475000
3A06Tc_sid_20min_6b1760.910.9701814.95050.25.817147151.2458332.413789e-065.8171472049.245833
4B01Tc_sid_20min_8a93.140.886105.15050.20.3370198.7625001.398440e-070.3370192761.662500
5B02Tc_sid_20min_8b425.420.900472.84850.21.51553839.4040006.288632e-071.5155382608.455000
6B03Tc_sid_20min_10a64.610.91870.41250.20.2256795.8676679.364429e-080.2256792776.136667
7B04Tc_sid_20min_10b-38.330.7910.00050.20.0000000.0000000.000000e+000.0000002805.475000
8B05Tc_sid_20min_12a205.380.930220.94450.20.70815418.4120002.938440e-070.7081542713.415000
9B06Tc_sid_20min_12b-30.530.7820.00050.20.0000000.0000000.000000e+000.0000002805.475000
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" ], "text/plain": [ " Positions Sample ID cpm Efficiency DPM in vial LSC, mL \\\n", "0 A03 Tc_sid_20min_4a 7069.88 0.975 7250.550 5 \n", "1 A04 Tc_sid_20min_5a 7887.32 0.977 8075.900 5 \n", "2 A05 Tc_sid_20min_6a -17.61 0.802 0.000 5 \n", "3 A06 Tc_sid_20min_6b 1760.91 0.970 1814.950 5 \n", "4 B01 Tc_sid_20min_8a 93.14 0.886 105.150 5 \n", "5 B02 Tc_sid_20min_8b 425.42 0.900 472.848 5 \n", "6 B03 Tc_sid_20min_10a 64.61 0.918 70.412 5 \n", "7 B04 Tc_sid_20min_10b -38.33 0.791 0.000 5 \n", "8 B05 Tc_sid_20min_12a 205.38 0.930 220.944 5 \n", "9 B06 Tc_sid_20min_12b -30.53 0.782 0.000 5 \n", "\n", " Tc aliquot, mL Vial, Bq/ml Sample, Bq/ml Sample [99Tc], M \\\n", "0 0.2 23.238942 604.212500 9.642853e-06 \n", "1 0.2 25.884295 672.991667 1.074053e-05 \n", "2 0.2 0.000000 0.000000 0.000000e+00 \n", "3 0.2 5.817147 151.245833 2.413789e-06 \n", "4 0.2 0.337019 8.762500 1.398440e-07 \n", "5 0.2 1.515538 39.404000 6.288632e-07 \n", "6 0.2 0.225679 5.867667 9.364429e-08 \n", "7 0.2 0.000000 0.000000 0.000000e+00 \n", "8 0.2 0.708154 18.412000 2.938440e-07 \n", "9 0.2 0.000000 0.000000 0.000000e+00 \n", "\n", " LSC waste, Bq/mL Bq, solid waste \n", "0 23.238942 -215.587500 \n", "1 25.884295 -559.483333 \n", "2 0.000000 2805.475000 \n", "3 5.817147 2049.245833 \n", "4 0.337019 2761.662500 \n", "5 1.515538 2608.455000 \n", "6 0.225679 2776.136667 \n", "7 0.000000 2805.475000 \n", "8 0.708154 2713.415000 \n", "9 0.000000 2805.475000 " ] }, "execution_count": 71, "metadata": {}, "output_type": "execute_result" } ], "source": [ "LSC_data_TC_11_03_26.data_20min = pd.read_excel(\"Tc pH assay siderite.xlsx\", sheet_name=\"LSC data\",skiprows=[0,1,2,3,5,6], nrows=10)\n", "LSC_data_TC_11_03_26.data_20min" ] }, { "cell_type": "code", "execution_count": 73, "id": "ca670fd3", "metadata": {}, "outputs": [ { "data": { "text/plain": [ "LSC waste, Bq/mL 57.726776\n", "Bq, solid waste 20550.269167\n", "dtype: float64" ] }, "execution_count": 73, "metadata": {}, "output_type": "execute_result" } ], "source": [ "LSC_data_TC_11_03_26.data_20min[[\"LSC waste, Bq/mL\", \"Bq, solid waste\"]].sum()\n" ] }, { "cell_type": "markdown", "id": "d01c706b", "metadata": {}, "source": [ "# Step 2: Do data anal" ] }, { "cell_type": "code", "execution_count": null, "id": "0bb6ad81", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "markdown", "id": "d658c450", "metadata": {}, "source": [ "# Step 3: Plot the data" ] } ], "metadata": { "kernelspec": { "display_name": "venv", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.14.3" } }, "nbformat": 4, "nbformat_minor": 5 }